HL_9QQQ_034

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

9QQQ|1|a|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQQ_034 not in the Motif Atlas

Geometric match to HL_8B0X_036

Geometric discrepancy: 0.0964

The information below is about HL_8B0X_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9QQQ|1|a|U|137
9QQQ|1|a|U|138
9QQQ|1|a|U|139
9QQQ|1|a|C|140
9QQQ|1|a|G|141
9QQQ|1|a|A|142

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23