HL_9QQQ_035

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQQ|1|a|U|158
9QQQ|1|a|G|159
9QQQ|1|a|A|160
9QQQ|1|a|A|161
9QQQ|1|a|U|162
9QQQ|1|a|C|163
9QQQ|1|a|C|164
9QQQ|1|a|A|165
9QQQ|1|a|U|166
9QQQ|1|a|A|167
9QQQ|1|a|G|168

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain w

Large ribosomal subunit protein bL28