HL_9QQQ_039
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CUGGAAAG
- Length
- 8 nucleotides
- Bulged bases
- 9QQQ|1|a|A|311
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QQQ_039 not in the Motif Atlas
- Homologous match to HL_7A0S_010
- Geometric discrepancy: 0.132
- The information below is about HL_7A0S_010
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_13999.4
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
9QQQ|1|a|C|305
9QQQ|1|a|U|306
9QQQ|1|a|G|307
9QQQ|1|a|G|308
9QQQ|1|a|A|309
9QQQ|1|a|A|310
9QQQ|1|a|A|311
9QQQ|1|a|G|312
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: