HL_9QQQ_043
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GGACCAUC
- Length
- 8 nucleotides
- Bulged bases
- 9QQQ|1|a|G|411
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QQQ_043 not in the Motif Atlas
- Homologous match to HL_7A0S_014
- Geometric discrepancy: 0.1212
- The information below is about HL_7A0S_014
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_30680.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9QQQ|1|a|G|410
9QQQ|1|a|G|411
9QQQ|1|a|A|412
9QQQ|1|a|C|413
9QQQ|1|a|C|414
9QQQ|1|a|A|415
9QQQ|1|a|U|416
9QQQ|1|a|C|417
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain k
- Large ribosomal subunit protein uL15
Coloring options: