HL_9QQQ_048

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9QQQ|1|a|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQQ_048 not in the Motif Atlas

Geometric match to HL_8B0X_049

Geometric discrepancy: 0.1861

The information below is about HL_8B0X_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9QQQ|1|a|C|611
9QQQ|1|a|G|612
9QQQ|1|a|A|613
9QQQ|1|a|A|614
9QQQ|1|a|U|615
9QQQ|1|a|A|616
9QQQ|1|a|G|617

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4