HL_9QQQ_060

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

9QQQ|1|a|U|1325, 9QQQ|1|a|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQQ_060 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.1628

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9QQQ|1|a|G|1324
9QQQ|1|a|U|1325
9QQQ|1|a|U|1326
9QQQ|1|a|A|1327
9QQQ|1|a|A|1328
9QQQ|1|a|U|1329
9QQQ|1|a|C|1330

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22