HL_9QQQ_075
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- G(PSU)AAC(3TD)A(PSU)AAC
- Length
- 11 nucleotides
- Bulged bases
- 9QQQ|1|a|A|1913
- QA status
- Modified nucleotides: PSU, 3TD
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QQQ_075 not in the Motif Atlas
- Geometric match to HL_9DFE_046
- Geometric discrepancy: 0.1045
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.2
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9QQQ|1|a|G|1910
9QQQ|1|a|PSU|1911
9QQQ|1|a|A|1912
9QQQ|1|a|A|1913
9QQQ|1|a|C|1914
9QQQ|1|a|3TD|1915
9QQQ|1|a|A|1916
9QQQ|1|a|PSU|1917
9QQQ|1|a|A|1918
9QQQ|1|a|A|1919
9QQQ|1|a|C|1920
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Z
- Transfer RNA; tRNA
Coloring options: