HL_9QQQ_093

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

9QQQ|1|a|U|2797, 9QQQ|1|a|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQQ_093 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3388

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9QQQ|1|a|C|2795
9QQQ|1|a|U|2796
9QQQ|1|a|U|2797
9QQQ|1|a|U|2798
9QQQ|1|a|A|2799
9QQQ|1|a|A|2800
9QQQ|1|a|G|2801

Current chains

Chain a

E. coli 23S rRNA

Nearby chains