HL_9QRP_002

3D structure

PDB id

9QRP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus seryl-tRNA synthetase bound to tRNA(ser)(GGA) and seryl-adenylate analogue.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCUUAAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QRP_002 not in the Motif Atlas

Geometric match to HL_9DE7_001

Geometric discrepancy: 0.1608

The information below is about HL_9DE7_001

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9QRP|1|T|G|52
9QRP|1|T|C|53
9QRP|1|T|U|54
9QRP|1|T|U|55
9QRP|1|T|A|56
9QRP|1|T|A|57
9QRP|1|T|A|58
9QRP|1|T|C|59

Current chains

Chain T

tRNA(Ser), GGA anticodon

Nearby chains

Chain B

Serine--tRNA ligase