HL_9QSA_009

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

9QSA|1|A2|G|315, 9QSA|1|A2|U|316

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|G|314
9QSA|1|A2|G|315
9QSA|1|A2|U|316
9QSA|1|A2|A|317
9QSA|1|A2|A|318
9QSA|1|A2|A|319
9QSA|1|A2|C|320
9QSA|1|A2|U|321
9QSA|1|A2|C|322
9QSA|1|A2|C|323

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F1

Large ribosomal subunit protein eL13

Chain H1

Large ribosomal subunit protein eL15

Chain U2

Large ribosomal subunit protein uL15

Chain c2

Large ribosomal subunit protein eL36

Chain i2

Large ribosomal subunit protein eL42