HL_9QSA_013

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGACUGUCCCCAGUGCG

Length

18 nucleotides

Bulged bases

9QSA|1|A2|G|1010, 9QSA|1|A2|U|1011, 9QSA|1|A2|C|1013, 9QSA|1|A2|C|1014

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|C|1004
9QSA|1|A2|G|1005
9QSA|1|A2|G|1006
9QSA|1|A2|A|1007
9QSA|1|A2|C|1008
9QSA|1|A2|U|1009
9QSA|1|A2|G|1010
9QSA|1|A2|U|1011
9QSA|1|A2|C|1012
9QSA|1|A2|C|1013
9QSA|1|A2|C|1014
9QSA|1|A2|C|1015
9QSA|1|A2|A|1016
9QSA|1|A2|G|1017
9QSA|1|A2|U|1018
9QSA|1|A2|G|1019
9QSA|1|A2|C|1020
9QSA|1|A2|G|1021

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain D1

Large ribosomal subunit protein uL16

Chain G2

Large ribosomal subunit protein uL18