HL_9QSA_108

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

9QSA|1|m2|C|1662, 9QSA|1|m2|A|1665, 9QSA|1|m2|G|1667

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|m2|G|1660
9QSA|1|m2|U|1661
9QSA|1|m2|C|1662
9QSA|1|m2|A|1663
9QSA|1|m2|U|1664
9QSA|1|m2|A|1665
9QSA|1|m2|A|1666
9QSA|1|m2|G|1667
9QSA|1|m2|C|1668

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain B3

Small ribosomal subunit protein eS19

Chain C3

Small ribosomal subunit protein uS10

Chain H3

Small ribosomal subunit protein uS14

Chain q2

Small ribosomal subunit protein uS3

Chain y2

Small ribosomal subunit protein uS9