HL_9QSJ_020

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9QSJ|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSJ_020 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.2028

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9QSJ|1|A|G|1089
9QSJ|1|A|U|1090
9QSJ|1|A|U|1091
9QSJ|1|A|A|1092
9QSJ|1|A|A|1093
9QSJ|1|A|G|1094
9QSJ|1|A|U|1095
9QSJ|1|A|C|1096

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain G

Small ribosomal subunit protein uS7

Chain U

Small ribosomal subunit protein bS21