HL_9QSJ_028

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAAAGGUAGAC

Length

11 nucleotides

Bulged bases

9QSJ|1|Y|G|18, 9QSJ|1|Y|G|19, 9QSJ|1|Y|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSJ_028 not in the Motif Atlas

Homologous match to HL_1F7U_001

Geometric discrepancy: 0.3445

The information below is about HL_1F7U_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55043.2

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

9QSJ|1|Y|G|12
9QSJ|1|Y|A|13
9QSJ|1|Y|A|14
9QSJ|1|Y|A|15
9QSJ|1|Y|G|18
9QSJ|1|Y|G|19
9QSJ|1|Y|U|20
9QSJ|1|Y|A|21
9QSJ|1|Y|G|22
9QSJ|1|Y|A|23
9QSJ|1|Y|C|24

Current chains

Chain Y

A-site tRNA-Leu

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA