HL_9QSJ_029
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- AUUCAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QSJ_029 not in the Motif Atlas
- Homologous match to HL_7U2J_104
- Geometric discrepancy: 0.1166
- The information below is about HL_7U2J_104
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9QSJ|1|Y|A|32
9QSJ|1|Y|U|33
9QSJ|1|Y|U|34
9QSJ|1|Y|C|35
9QSJ|1|Y|A|36
9QSJ|1|Y|A|37
9QSJ|1|Y|A|38
9QSJ|1|Y|A|39
9QSJ|1|Y|U|40
Current chains
- Chain Y
- A-site tRNA-Leu
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- Small ribosomal subunit protein uS12
- Chain X
- ermBL mRNA transcript
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: