HL_9QSJ_042

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9QSJ|1|a|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSJ_042 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1302

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9QSJ|1|a|C|305
9QSJ|1|a|U|306
9QSJ|1|a|G|307
9QSJ|1|a|G|308
9QSJ|1|a|A|309
9QSJ|1|a|A|310
9QSJ|1|a|A|311
9QSJ|1|a|G|312

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL24