HL_9QSJ_044
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 9QSJ|1|a|G|329, 9QSJ|1|a|A|330, 9QSJ|1|a|C|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QSJ_044 not in the Motif Atlas
- Homologous match to HL_7A0S_012
- Geometric discrepancy: 0.3816
- The information below is about HL_7A0S_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.4
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 16
Unit IDs
9QSJ|1|a|G|327
9QSJ|1|a|U|328
9QSJ|1|a|G|329
9QSJ|1|a|A|330
9QSJ|1|a|C|331
9QSJ|1|a|A|332
9QSJ|1|a|G|333
9QSJ|1|a|C|334
9QSJ|1|a|C|335
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: