HL_9QSJ_063
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GUUAAUC
- Length
- 7 nucleotides
- Bulged bases
- 9QSJ|1|a|U|1325, 9QSJ|1|a|U|1329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QSJ_063 not in the Motif Atlas
- Homologous match to HL_7A0S_033
- Geometric discrepancy: 0.1656
- The information below is about HL_7A0S_033
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_49081.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
9QSJ|1|a|G|1324
9QSJ|1|a|U|1325
9QSJ|1|a|U|1326
9QSJ|1|a|A|1327
9QSJ|1|a|A|1328
9QSJ|1|a|U|1329
9QSJ|1|a|C|1330
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- Large ribosomal subunit protein uL22
Coloring options: