HL_9QSJ_066

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9QSJ|1|a|A|1453, 9QSJ|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSJ_066 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.0691

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9QSJ|1|a|C|1451
9QSJ|1|a|G|1452
9QSJ|1|a|A|1453
9QSJ|1|a|C|1454
9QSJ|1|a|G|1455
9QSJ|1|a|G|1456
9QSJ|1|a|U|1457
9QSJ|1|a|U|1458
9QSJ|1|a|G|1459

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17