HL_9QSJ_083
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CUAAAGAGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 9QSJ|1|a|A|2268, 9QSJ|1|a|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QSJ_083 not in the Motif Atlas
- Homologous match to HL_7A0S_053
- Geometric discrepancy: 0.1218
- The information below is about HL_7A0S_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.1
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
9QSJ|1|a|C|2264
9QSJ|1|a|U|2265
9QSJ|1|a|A|2266
9QSJ|1|a|A|2267
9QSJ|1|a|A|2268
9QSJ|1|a|G|2269
9QSJ|1|a|A|2270
9QSJ|1|a|G|2271
9QSJ|1|a|U|2272
9QSJ|1|a|A|2273
9QSJ|1|a|A|2274
9QSJ|1|a|C|2275
9QSJ|1|a|G|2276
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain l
- Large ribosomal subunit protein uL16
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: