HL_9QSJ_085
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UGCAAUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QSJ_085 not in the Motif Atlas
- Homologous match to HL_7A0S_055
- Geometric discrepancy: 0.2031
- The information below is about HL_7A0S_055
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
9QSJ|1|a|U|2324
9QSJ|1|a|G|2325
9QSJ|1|a|C|2326
9QSJ|1|a|A|2327
9QSJ|1|a|A|2328
9QSJ|1|a|U|2329
9QSJ|1|a|G|2330
9QSJ|1|a|G|2331
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain l
- Large ribosomal subunit protein uL16
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: