HL_9QSJ_088
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UGAAUGGAAG
- Length
- 10 nucleotides
- Bulged bases
- 9QSJ|1|a|A|2406
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QSJ_088 not in the Motif Atlas
- Homologous match to HL_7A0S_058
- Geometric discrepancy: 0.2073
- The information below is about HL_7A0S_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51853.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9QSJ|1|a|U|2404
9QSJ|1|a|G|2405
9QSJ|1|a|A|2406
9QSJ|1|a|A|2407
9QSJ|1|a|U|2408
9QSJ|1|a|G|2409
9QSJ|1|a|G|2410
9QSJ|1|a|A|2411
9QSJ|1|a|A|2412
9QSJ|1|a|G|2413
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain k
- Large ribosomal subunit protein uL15
Coloring options: