HL_9QSJ_089
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- AGUUCAUAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QSJ_089 not in the Motif Atlas
- Homologous match to HL_7A0S_059
- Geometric discrepancy: 0.2226
- The information below is about HL_7A0S_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9QSJ|1|a|A|2471
9QSJ|1|a|G|2472
9QSJ|1|a|U|2473
9QSJ|1|a|U|2474
9QSJ|1|a|C|2475
9QSJ|1|a|A|2476
9QSJ|1|a|U|2477
9QSJ|1|a|A|2478
9QSJ|1|a|U|2479
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain Y
- Transfer RNA; tRNA
- Chain g
- Large ribosomal subunit protein uL6
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: