HL_9QSJ_095
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9QSJ|1|a|G|2751, 9QSJ|1|a|C|2755
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QSJ_095 not in the Motif Atlas
- Homologous match to HL_7A0S_065
- Geometric discrepancy: 0.2462
- The information below is about HL_7A0S_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.3
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 11
Unit IDs
9QSJ|1|a|C|2745
9QSJ|1|a|U|2746
9QSJ|1|a|G|2747
9QSJ|1|a|A|2748
9QSJ|1|a|A|2749
9QSJ|1|a|A|2750
9QSJ|1|a|G|2751
9QSJ|1|a|C|2752
9QSJ|1|a|A|2753
9QSJ|1|a|U|2754
9QSJ|1|a|C|2755
9QSJ|1|a|U|2756
9QSJ|1|a|A|2757
9QSJ|1|a|A|2758
9QSJ|1|a|G|2759
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain g
- Large ribosomal subunit protein uL6
- Chain i
- Large ribosomal subunit protein uL13
Coloring options: