HL_9QWT_074

3D structure

PDB id

9QWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGUUCGAUUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QWT_074 not in the Motif Atlas

Homologous match to HL_5E81_248

Geometric discrepancy: 0.5691

The information below is about HL_5E81_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60848.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9QWT|1|Bv|U|51
9QWT|1|Bv|G|52
9QWT|1|Bv|G|53
9QWT|1|Bv|U|54
9QWT|1|Bv|U|55
9QWT|1|Bv|C|56
9QWT|1|Bv|G|57
9QWT|1|Bv|A|58
9QWT|1|Bv|U|59
9QWT|1|Bv|U|60
9QWT|1|Bv|C|61
9QWT|1|Bv|C|62
9QWT|1|Bv|G|63

Current chains

Chain Bv

transfer RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain D1

Large ribosomal subunit protein uL16