HL_9R9O_003

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCGAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_003 not in the Motif Atlas

Homologous match to HL_1QTQ_003

Geometric discrepancy: 0.2015

The information below is about HL_1QTQ_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9R9O|1|6|G|53
9R9O|1|6|U|54
9R9O|1|6|U|55
9R9O|1|6|C|56
9R9O|1|6|G|57
9R9O|1|6|A|58
9R9O|1|6|A|59
9R9O|1|6|C|60
9R9O|1|6|C|61

Current chains

Chain 6

tRNA Methionin elongator

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

60S ribosomal protein L11-A

Chain Lo

60S ribosomal protein L42-A