9R9O Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9R9O_001 | 1/6/13:22 | No text annotation | homologous HL_7YSE_001 NA | |
| HL_9R9O_002 | 1/6/30:40 | No text annotation | homologous HL_5IB8_208 HL_14063.2 | |
| HL_9R9O_004 | 1/C1/38:45 | No text annotation | homologous HL_8GLP_001 HL_02262.2 | |
| HL_9R9O_005 | 1/C1/69:74 | No text annotation | homologous HL_9PN5_002 HL_23875.2 | |
| HL_9R9O_006 | 1/C1/90:96 | No text annotation | homologous HL_9AXU_003 HL_76371.5 | |
| HL_9R9O_007 | 1/C1/132:136 | No text annotation | homologous HL_9PN5_004 HL_01957.2 | |
| HL_9R9O_008 | 1/C1/194:201 | No text annotation | homologous HL_9PN5_005 HL_13999.6 | |
| HL_9R9O_009 | 1/C1/208:212 | No text annotation | geometric HL_8B0X_042 HL_75660.11 | |
| HL_9R9O_010 | 1/C1/216:224 | No text annotation | homologous HL_9PN5_007 HL_27670.7 | |
| HL_9R9O_011 | 1/C1/278:287 | No text annotation | homologous HL_9PN5_008 HL_63894.5 | |
| HL_9R9O_012 | 1/C1/303:312 | No text annotation | homologous HL_9PN5_009 HL_00911.5 | |
| HL_9R9O_013 | 1/C1/357:362 | No text annotation | homologous HL_9AXU_010 HL_34789.7 | |
| HL_9R9O_014 | 1/C1/382:387 | No text annotation | homologous HL_8GLP_118 HL_34789.7 | |
| HL_9R9O_016 | 1/C1/599:604 | No text annotation | homologous HL_9PN5_013 HL_34789.7 | |
| HL_9R9O_017 | 1/C1/640:649 | T-loop with 2 stacked bulged bases | homologous HL_9AXU_013 HL_33597.8 | |
| HL_9R9O_018 | 1/C1/686:694 | No text annotation | homologous HL_9PN5_015 HL_18470.6 | |
| HL_9R9O_019 | 1/C1/707:712 | No text annotation | homologous HL_9AXU_015 HL_34789.7 | |
| HL_9R9O_020 | 1/C1/732:737 | No text annotation | homologous HL_9H3G_023 HL_34789.7 | |
| HL_9R9O_021 | 1/C1/763:768 | No text annotation | homologous HL_9PN5_018 HL_44506.5 | |
| HL_9R9O_022 | 1/C1/844:849 | No text annotation | homologous HL_8GLP_022 HL_34789.7 | |
| HL_9R9O_023 | 1/C1/876:885 | No text annotation | homologous HL_9PN5_020 HL_50204.4 | |
| HL_9R9O_024 | 1/C1/910:918 | No text annotation | homologous HL_9PN5_021 HL_28253.2 | |
| HL_9R9O_025 | 1/C1/958:963 | No text annotation | homologous HL_9H3G_028 HL_27530.4 | |
| HL_9R9O_026 | 1/C1/1076:1083 | No text annotation | homologous HL_9AXU_022 HL_63894.5 | |
| HL_9R9O_027 | 1/C1/1126:1132 | No text annotation | homologous HL_8GLP_028 HL_34789.7 | |
| HL_9R9O_028 | 1/C1/1148:1155 | No text annotation | homologous HL_9PN5_025 HL_47171.4 | |
| HL_9R9O_029 | 1/C1/1347:1357 | No text annotation | homologous HL_9SUM_027 HL_40612.2 | |
| HL_9R9O_030 | 1/C1/1403:1408 | No text annotation | homologous HL_9PN5_029 HL_34789.7 | |
| HL_9R9O_031 | 1/C1/1462:1470 | No text annotation | homologous HL_9PN5_030 HL_33597.8 | |
| HL_9R9O_032 | 1/C1/1506:1512 | No text annotation | homologous HL_9AXU_029 HL_49081.3 | |
| HL_9R9O_033 | 1/C1/1544:1549 | No text annotation | homologous HL_9PN5_032 HL_34789.7 | |
| HL_9R9O_034 | 1/C1/1599:1608 | No text annotation | homologous HL_9PN5_034 HL_77449.4 | |
| HL_9R9O_035 | 1/C1/1634:1639 | No text annotation | homologous HL_9AXU_033 HL_34789.7 | |
| HL_9R9O_036 | 1/C1/1680:1688 | No text annotation | homologous HL_9PN5_036 HL_22758.4 | |
| HL_9R9O_037 | 1/C1/1719:1725 | No text annotation | homologous HL_9PN5_037 HL_97067.2 | |
| HL_9R9O_038 | 1/C1/1792:1796 | No text annotation | homologous HL_9PN5_039 HL_90436.6 | |
| HL_9R9O_039 | 1/C1/1844:1851 | No text annotation | homologous HL_9PN5_040 HL_28592.5 | |
| HL_9R9O_040 | 1/C1/1862:1868 | No text annotation | homologous HL_9PN5_041 HL_34789.7 | |
| HL_9R9O_041 | 1/C1/1923:1928 | No text annotation | homologous HL_9AXU_040 HL_61337.7 | |
| HL_9R9O_042 | 1/C1/2110:2114 | No text annotation | homologous HL_9PN5_043 HL_17051.1 | |
| HL_9R9O_043 | 1/C1/2135:2145 | No text annotation | homologous HL_9PN5_044 HL_87681.4 | |
| HL_9R9O_044 | 1/C1/2164:2170 | No text annotation | homologous HL_9PN5_045 HL_34789.7 | |
| HL_9R9O_045 | 1/C1/2220:2225 | No text annotation | homologous HL_9PN5_046 HL_34789.7 | |
| HL_9R9O_046 | 1/C1/2253:2263 | No text annotation | homologous HL_9H3G_052 HL_82185.4 | |
| HL_9R9O_047 | 1/C1/2292:2300 | No text annotation | homologous HL_8GLP_054 HL_77449.4 | |
| HL_9R9O_048 | 1/C1/2369:2378 | No text annotation | homologous HL_9PN5_049 HL_78372.4 | |
| HL_9R9O_050 | 1/C1/2616:2624 | No text annotation | homologous HL_9PN5_052 HL_11974.5 | |
| HL_9R9O_051 | 1/C1/2633:2645 | No text annotation | homologous HL_9PN5_053 HL_02042.4 | |
| HL_9R9O_052 | 1/C1/2673:2681 | No text annotation | homologous HL_8GLP_061 HL_02452.4 | |
| HL_9R9O_053 | 1/C1/2693:2700 | No text annotation | homologous HL_9PN5_055 HL_52651.5 | |
| HL_9R9O_054 | 1/C1/2724:2732 | No text annotation | homologous HL_9PN5_056 HL_15296.4 | |
| HL_9R9O_055 | 1/C1/2744:2749 | No text annotation | homologous HL_9PN5_057 HL_34789.7 | |
| HL_9R9O_056 | 1/C1/2776:2784 | No text annotation | homologous HL_9PN5_058 HL_52651.5 | |
| HL_9R9O_057 | 1/C1/2897:2904 | No text annotation | homologous HL_8GLP_067 HL_02262.2 | |
| HL_9R9O_058 | 1/C1/2918:2928 | No text annotation | ||
| HL_9R9O_059 | 1/C1/2963:2968 | No text annotation | homologous HL_8GLP_069 HL_34789.7 | |
| HL_9R9O_060 | 1/C1/3025:3030 | No text annotation | homologous HL_8GLP_070 HL_34789.7 | |
| HL_9R9O_061 | 1/C1/3068:3073 | No text annotation | homologous HL_8GLP_071 HL_12125.5 | |
| HL_9R9O_062 | 1/C1/3110:3124 | No text annotation | homologous HL_9PN5_065 HL_53269.5 | |
| HL_9R9O_063 | 1/C1/3194:3197 | No text annotation | homologous HL_9PN5_066 HL_01957.2 | |
| HL_9R9O_064 | 1/C1/3240:3247 | No text annotation | homologous HL_9PN5_067 HL_31089.4 | |
| HL_9R9O_065 | 1/C1/3303:3311 | No text annotation | homologous HL_9PN5_068 HL_37889.4 | |
| HL_9R9O_066 | 1/C1/3350:3353 | No text annotation | homologous HL_9PN5_069 HL_90436.6 | |
| HL_9R9O_067 | 1/C2/7:17 | No text annotation | homologous HL_9PN5_077 HL_73535.4 | |
| HL_9R9O_068 | 1/C2/70:81 | No text annotation | homologous HL_9PN5_078 HL_46419.1 | |
| HL_9R9O_069 | 1/C2/154:160 | No text annotation | homologous HL_9PN5_079 HL_34789.7 | |
| HL_9R9O_070 | 1/C2/243:250 | No text annotation | homologous HL_9PN5_082 HL_67772.4 | |
| HL_9R9O_071 | 1/C2/275:281 | No text annotation | ||
| HL_9R9O_072 | 1/C2/330:338 | No text annotation | homologous HL_9PN5_084 HL_87268.5 | |
| HL_9R9O_073 | 1/C2/368:373 | GNRA | geometric HL_3RG5_007 HL_34789.7 | |
| HL_9R9O_074 | 1/C2/393:404 | No text annotation | homologous HL_9PN5_086 HL_86432.4 | |
| HL_9R9O_075 | 1/C2/414:419 | No text annotation | homologous HL_9PN5_087 HL_61337.7 | |
| HL_9R9O_076 | 1/C2/450:456 | No text annotation | homologous HL_9PN5_088 HL_25795.2 | |
| HL_9R9O_077 | 1/C2/520:532 | No text annotation | homologous HL_9PN5_090 HL_68749.4 | |
| HL_9R9O_078 | 1/C2/569:574 | No text annotation | homologous HL_9PN5_091 HL_34789.7 | |
| HL_9R9O_079 | 1/C2/764:772 | No text annotation | homologous HL_9PN5_092 HL_11974.5 | |
| HL_9R9O_080 | 1/C2/777:783 | No text annotation | homologous HL_9PN5_093 HL_89167.5 | |
| HL_9R9O_081 | 1/C2/900:909 | No text annotation | homologous HL_9H3G_093 HL_38491.5 | |
| HL_9R9O_082 | 1/C2/937:942 | No text annotation | homologous HL_9PN5_096 HL_34789.7 | |
| HL_9R9O_083 | 1/C2/997:1007 | No text annotation | homologous HL_9H3G_095 HL_38491.5 | |
| HL_9R9O_084 | 1/C2/1084:1089 | No text annotation | homologous HL_9PN5_099 HL_34789.7 | |
| HL_9R9O_085 | 1/C2/1121:1126 | No text annotation | homologous HL_9PN5_100 HL_34789.7 | |
| HL_9R9O_086 | 1/C2/1188:1197 | No text annotation | homologous HL_9PN5_101 HL_97521.4 | |
| HL_9R9O_088 | 1/C2/1296:1301 | No text annotation | homologous HL_9H3G_101 HL_34789.7 | |
| HL_9R9O_089 | 1/C2/1309:1316 | No text annotation | homologous HL_9H3G_102 HL_63894.5 | |
| HL_9R9O_090 | 1/C2/1359:1364 | No text annotation | geometric HL_6DTD_001 HL_89167.5 | |
| HL_9R9O_091 | 1/C2/1396:1402 | No text annotation | ||
| HL_9R9O_092 | 1/C2/1501:1506 | No text annotation | homologous HL_9PN5_107 HL_34789.7 | |
| HL_9R9O_093 | 1/C2/1550:1561 | No text annotation | homologous HL_9PN5_108 HL_50951.4 | |
| HL_9R9O_094 | 1/C2/1594:1602 | No text annotation | homologous HL_9H3G_107 HL_25307.3 | |
| HL_9R9O_095 | 1/C2/1778:1783 | No text annotation | homologous HL_9H3G_108 HL_34789.7 | |
| HL_9R9O_096 | 1/C3/47:56 | No text annotation | homologous HL_9PN5_073 HL_17803.4 | |
| HL_9R9O_097 | 1/C3/69:89 | No text annotation | homologous HL_9AXU_072 HL_68571.2 | |
| HL_9R9O_098 | 1/C3/108:114 | No text annotation | homologous HL_9PN5_075 HL_23875.2 | |
| HL_9R9O_099 | 1/C3/124:129 | No text annotation | homologous HL_9PN5_076 HL_18050.2 | |
| HL_9R9O_100 | 1/C4/32:45 | No text annotation | geometric HL_8OI5_068 HL_01182.3 | |
| HL_9R9O_101 | 1/C4/36:41 | No text annotation | homologous HL_4V9F_071 HL_59381.5 | |
| HL_9R9O_102 | 1/C4/88:93 | GNRA | homologous HL_4V9F_072 HL_34789.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9R9O_003 | T-loop with 2 stacked bulged bases | ||
| HL_9R9O_015 | No text annotation | ||
| HL_9R9O_049 | No text annotation | ||
| HL_9R9O_087 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9R9O_002 | 1/C1/7:8, 1/C3/150:152 | Single bulged C | homologous IL_9PN5_001 IL_05642.6 | |
| IL_9R9O_003 | 1/C1/13:15, 1/C3/144:145 | Single bulged U | homologous IL_9PN5_002 IL_97561.8 | |
| IL_9R9O_004 | 1/C1/27:28, 1/C1/56:58 | Single stack bend | homologous IL_9PN5_003 IL_15011.6 | |
| IL_9R9O_005 | 1/C1/31:38, 1/C1/45:53 | tSH-tHW-tHH-tHS | homologous IL_9PN5_004 IL_93502.4 | |
| IL_9R9O_006 | 1/C1/82:89, 1/C1/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_9PN5_005 IL_62879.2 | |
| IL_9R9O_007 | 1/C1/123:124, 1/C1/144:149 | No text annotation | homologous IL_9PN5_006 IL_10396.4 | |
| IL_9R9O_008 | 1/C1/125:127, 1/C1/141:143 | Isolated non-canonical cWW pair | homologous IL_9AXU_007 IL_01003.7 | |
| IL_9R9O_009 | 1/C1/164:166, 1/C1/256:257 | Single stack bend | homologous IL_9PN5_009 IL_15011.6 | |
| IL_9R9O_011 | 1/C1/177:178, 1/C1/238:241 | Major groove platform | homologous IL_8GLP_012 IL_48076.11 | |
| IL_9R9O_012 | 1/C1/189:191, 1/C1/204:205 | Single bulged U | homologous IL_9PN5_011 IL_97561.8 | |
| IL_9R9O_013 | 1/C1/337:339, 1/C3/25:26 | Single bulged A | homologous IL_9PN5_012 IL_14190.5 | |
| IL_9R9O_014 | 1/C1/376:379, 1/C1/390:403 | No text annotation | geometric IL_8OI5_015 IL_44923.4 | |
| IL_9R9O_015 | 1/C1/404:410, 1/C3/13:19 | No text annotation | homologous IL_9PN5_014 IL_22311.4 | |
| IL_9R9O_016 | 1/C1/429:431, 1/C1/628:630 | No text annotation | homologous IL_9PN5_015 IL_81485.1 | |
| IL_9R9O_017 | 1/C1/512:513, 1/C1/577:579 | Single bulged A | homologous IL_9PN5_017 IL_14190.5 | |
| IL_9R9O_018 | 1/C1/517:525, 1/C1/567:573 | No text annotation | homologous IL_9PN5_018 IL_40132.1 | |
| IL_9R9O_019 | 1/C1/531:538, 1/C1/553:561 | No text annotation | homologous IL_9PN5_019 IL_25001.3 | |
| IL_9R9O_020 | 1/C1/668:670, 1/C1/792:794 | Isolated non-canonical cWW pair | homologous IL_9PN5_020 IL_01003.7 | |
| IL_9R9O_021 | 1/C1/680:684, 1/C1/696:700 | No text annotation | homologous IL_9PN5_021 IL_87030.3 | |
| IL_9R9O_022 | 1/C1/725:728, 1/C1/741:745 | UAA/GAN variation | homologous IL_9PN5_022 IL_45790.4 | |
| IL_9R9O_023 | 1/C1/752:753, 1/C1/779:781 | Single bulged A | homologous IL_9PN5_023 IL_14190.5 | |
| IL_9R9O_024 | 1/C1/755:756, 1/C1/775:777 | Single bulged U | homologous IL_9PN5_024 IL_97561.8 | |
| IL_9R9O_025 | 1/C1/758:763, 1/C1/768:773 | No text annotation | homologous IL_9PN5_025 IL_28265.2 | |
| IL_9R9O_026 | 1/C1/803:805, 1/C1/938:940 | Isolated non-canonical cWW pair | homologous IL_9PN5_026 IL_01003.7 | |
| IL_9R9O_027 | 1/C1/805:809, 1/C1/931:938 | No text annotation | homologous IL_9PN5_027 IL_73855.4 | |
| IL_9R9O_028 | 1/C1/833:834, 1/C1/859:861 | Single bulged G | homologous IL_9PN5_029 IL_28408.5 | |
| IL_9R9O_029 | 1/C1/834:838, 1/C1/855:859 | No text annotation | homologous IL_9PN5_030 IL_15190.5 | |
| IL_9R9O_030 | 1/C1/869:872, 1/C1/888:890 | No text annotation | homologous IL_9PN5_031 IL_36931.5 | |
| IL_9R9O_031 | 1/C1/873:875, 1/C1/886:887 | Single bulged U | homologous IL_9PN5_032 IL_97561.8 | |
| IL_9R9O_032 | 1/C1/907:909, 1/C1/919:923 | No text annotation | homologous IL_9PN5_033 IL_89509.4 | |
| IL_9R9O_033 | 1/C1/954:956, 1/C1/965:967 | Isolated non-canonical cWW pair | homologous IL_9H3G_040 IL_71625.6 | |
| IL_9R9O_034 | 1/C1/969:970, 1/C1/1111:1113 | Single stack bend | homologous IL_9PN5_034 IL_15011.6 | |
| IL_9R9O_035 | 1/C1/977:982, 1/C1/1101:1104 | No text annotation | homologous IL_9PN5_035 IL_27774.1 | |
| IL_9R9O_036 | 1/C1/983:985, 1/C1/1099:1100 | Single bulged G | homologous IL_9H3G_043 IL_28408.5 | |
| IL_9R9O_037 | 1/C1/991:997, 1/C1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_9PN5_037 IL_94128.4 | |
| IL_9R9O_038 | 1/C1/997:998, 1/C1/1050:1052 | Minor groove platform | homologous IL_9PN5_038 IL_37129.1 | |
| IL_9R9O_039 | 1/C1/999:1004, 1/C1/1046:1049 | No text annotation | homologous IL_9PN5_039 IL_16301.4 | |
| IL_9R9O_040 | 1/C1/1006:1009, 1/C1/1041:1044 | Tandem non-canonical cWW pairs; U in syn | homologous IL_9PN5_040 IL_71194.5 | |
| IL_9R9O_041 | 1/C1/1009:1011, 1/C1/1039:1041 | Isolated non-canonical cWW pair | homologous IL_9H3G_048 IL_01003.7 | |
| IL_9R9O_042 | 1/C1/1069:1071, 1/C1/1087:1089 | Isolated non-canonical cWW pair | homologous IL_9PN5_042 IL_01003.7 | |
| IL_9R9O_043 | 1/C1/1074:1076, 1/C1/1083:1084 | Single bulged G | homologous IL_9AXU_043 IL_28408.5 | |
| IL_9R9O_044 | 1/C1/1120:1122, 1/C1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_9PN5_044 IL_01003.7 | |
| IL_9R9O_045 | 1/C1/1167:1171, 1/C1/1328:1332 | UAA/GAN | homologous IL_9PN5_046 IL_08938.4 | |
| IL_9R9O_046 | 1/C1/1173:1180, 1/C1/1325:1326 | No text annotation | homologous IL_9PN5_047 IL_46868.2 | |
| IL_9R9O_047 | 1/C1/1180:1182, 1/C1/1324:1325 | Single bulged U | homologous IL_9PN5_048 IL_97561.8 | |
| IL_9R9O_048 | 1/C1/1187:1194, 1/C1/1314:1319 | No text annotation | homologous IL_9AXU_048 IL_39054.4 | |
| IL_9R9O_049 | 1/C1/1194:1205, 1/C1/1299:1314 | No text annotation | homologous IL_9PN5_050 IL_34501.4 | |
| IL_9R9O_050 | 1/C1/1207:1209, 1/C1/1296:1297 | Single bulged U | homologous IL_9AXU_050 IL_97561.8 | |
| IL_9R9O_052 | 1/C1/1376:1378, 1/C1/1428:1431 | No text annotation | homologous IL_9PN5_056 IL_84227.2 | |
| IL_9R9O_053 | 1/C1/1385:1387, 1/C1/1420:1421 | Single bulged A | homologous IL_9PN5_057 IL_14190.5 | |
| IL_9R9O_054 | 1/C1/1388:1395, 1/C1/1415:1419 | Kink-turn | homologous IL_9PN5_058 IL_90775.4 | |
| IL_9R9O_055 | 1/C1/1398:1400, 1/C1/1411:1412 | Single bulged A | homologous IL_9PN5_059 IL_14190.5 | |
| IL_9R9O_056 | 1/C1/1444:1450, 1/C1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_9H3G_064 IL_02666.4 | |
| IL_9R9O_057 | 1/C1/1500:1505, 1/C1/1513:1516 | No text annotation | homologous IL_9PN5_061 IL_98911.1 | |
| IL_9R9O_058 | 1/C1/1532:1536, 1/C1/1585:1590 | UAA/GAN | homologous IL_9PN5_062 IL_08938.4 | |
| IL_9R9O_060 | 1/C1/1618:1621, 1/C1/1824:1826 | No text annotation | homologous IL_9PN5_063 IL_77718.1 | |
| IL_9R9O_061 | 1/C1/1623:1631, 1/C1/1811:1822 | No text annotation | ||
| IL_9R9O_062 | 1/C1/1645:1649, 1/C1/1806:1810 | No text annotation | homologous IL_9PN5_066 IL_15190.5 | |
| IL_9R9O_063 | 1/C1/1661:1663, 1/C1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_9PN5_067 IL_01003.7 | |
| IL_9R9O_064 | 1/C1/1669:1670, 1/C1/1778:1780 | Single bulged C | homologous IL_9PN5_068 IL_05642.6 | |
| IL_9R9O_065 | 1/C1/1670:1671, 1/C1/1776:1778 | Single stack bend | homologous IL_9PN5_069 IL_15011.6 | |
| IL_9R9O_066 | 1/C1/1694:1698, 1/C1/1747:1752 | No text annotation | homologous IL_9AXU_067 IL_25943.3 | |
| IL_9R9O_067 | 1/C1/1702:1707, 1/C1/1737:1743 | No text annotation | homologous IL_9PN5_070 IL_70240.1 | |
| IL_9R9O_068 | 1/C1/1711:1717, 1/C1/1727:1733 | No text annotation | homologous IL_9PN5_071 IL_93476.4 | |
| IL_9R9O_069 | 1/C1/1883:1889, 1/C1/2346:2349 | No text annotation | homologous IL_9PN5_072 IL_89862.4 | |
| IL_9R9O_070 | 1/C1/1895:1897, 1/C1/2338:2340 | No text annotation | homologous IL_9PN5_073 IL_10432.4 | |
| IL_9R9O_071 | 1/C1/1898:1901, 1/C1/2336:2337 | Major groove platform; stack outside cWW | geometric IL_9E6Q_063 IL_74641.5 | |
| IL_9R9O_072 | 1/C1/1898:1906, 1/C1/2333:2337 | No text annotation | geometric IL_9PN5_075 IL_80252.4 | |
| IL_9R9O_073 | 1/C1/1901:1906, 1/C1/2333:2336 | No text annotation | homologous IL_9PN5_076 IL_28217.4 | |
| IL_9R9O_074 | 1/C1/1918:1923, 1/C1/1928:1934 | No text annotation | homologous IL_9PN5_077 IL_20700.4 | |
| IL_9R9O_075 | 1/C1/1940:1942, 1/C1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_9PN5_078 IL_01003.7 | |
| IL_9R9O_076 | 1/C1/1947:1948, 1/C1/2098:2101 | No text annotation | homologous IL_9H3G_090 IL_18824.4 | |
| IL_9R9O_077 | 1/C1/2128:2129, 1/C1/2323:2325 | Single bulged A | homologous IL_9PN5_080 IL_14190.5 | |
| IL_9R9O_078 | 1/C1/2156:2161, 1/C1/2173:2180 | No text annotation | homologous IL_8GLP_114 IL_14684.4 | |
| IL_9R9O_079 | 1/C1/2196:2199, 1/C1/2245:2246 | No text annotation | homologous IL_9PN5_082 IL_55206.4 | |
| IL_9R9O_080 | 1/C1/2200:2201, 1/C1/2241:2244 | No text annotation | homologous IL_9PN5_083 IL_71421.6 | |
| IL_9R9O_081 | 1/C1/2204:2217, 1/C1/2228:2238 | No text annotation | homologous IL_9AXU_082 NA | |
| IL_9R9O_082 | 1/C1/2276:2277, 1/C1/2307:2310 | No text annotation | geometric IL_9PN5_086 IL_24886.5 | |
| IL_9R9O_083 | 1/C1/2277:2288, 1/C1/2304:2307 | No text annotation | homologous IL_9PN5_087 IL_84014.4 | |
| IL_9R9O_084 | 1/C1/2391:2394, 1/C1/2986:2988 | No text annotation | homologous IL_9PN5_088 IL_75527.5 | |
| IL_9R9O_085 | 1/C1/2396:2398, 1/C1/2981:2984 | No text annotation | homologous IL_9PN5_089 IL_80025.4 | |
| IL_9R9O_086 | 1/C1/2409:2411, 1/C1/2811:2812 | Single bulged U | homologous IL_9PN5_090 IL_97561.8 | |
| IL_9R9O_087 | 1/C1/2412:2413, 1/C1/2807:2810 | Minor groove platform | homologous IL_9AXU_088 IL_37129.1 | |
| IL_9R9O_088 | 1/C1/2423:2425, 1/C1/2604:2607 | No text annotation | homologous IL_9PN5_092 IL_87316.5 | |
| IL_9R9O_090 | 1/C1/2520:2526, 1/C1/2584:2587 | No text annotation | homologous IL_9PN5_093 IL_52092.4 | |
| IL_9R9O_091 | 1/C1/2614:2615, 1/C1/2625:2627 | AG tHS outside loop | homologous IL_9PN5_094 IL_14190.5 | |
| IL_9R9O_092 | 1/C1/2666:2668, 1/C1/2686:2690 | No text annotation | homologous IL_9PN5_095 IL_14250.4 | |
| IL_9R9O_093 | 1/C1/2718:2721, 1/C1/2735:2738 | Tandem non-canonical cWW pairs with external base triple | homologous IL_9PN5_096 IL_15225.5 | |
| IL_9R9O_094 | 1/C1/2770:2773, 1/C1/2787:2788 | No text annotation | homologous IL_9PN5_097 IL_71706.3 | |
| IL_9R9O_095 | 1/C1/2823:2826, 1/C1/2863:2867 | No text annotation | homologous IL_9PN5_098 IL_10004.1 | |
| IL_9R9O_096 | 1/C1/2826:2828, 1/C1/2862:2863 | No text annotation | homologous IL_9PN5_099 IL_46637.5 | |
| IL_9R9O_097 | 1/C1/2828:2830, 1/C1/2858:2862 | No text annotation | homologous IL_9H3G_119 IL_36931.5 | |
| IL_9R9O_098 | 1/C1/2835:2839, 1/C1/2849:2853 | No text annotation | homologous IL_9PN5_101 IL_87767.5 | |
| IL_9R9O_099 | 1/C1/2876:2877, 1/C1/2949:2951 | No text annotation | homologous IL_8GLP_146 IL_46637.5 | |
| IL_9R9O_100 | 1/C1/2879:2881, 1/C1/2943:2947 | No text annotation | homologous IL_9PN5_103 IL_30722.2 | |
| IL_9R9O_101 | 1/C1/2881:2882, 1/C1/2940:2943 | No text annotation | homologous IL_9PN5_104 IL_44609.5 | |
| IL_9R9O_102 | 1/C1/2889:2891, 1/C1/2912:2914 | Isolated non-canonical cWW pair | geometric IL_9AXU_101 IL_01003.7 | |
| IL_9R9O_103 | 1/C1/2889:2892, 1/C1/2909:2914 | No text annotation | homologous IL_9AXU_102 NA | |
| IL_9R9O_104 | 1/C1/2891:2892, 1/C1/2909:2912 | No text annotation | homologous IL_9AXU_103 IL_94991.4 | |
| IL_9R9O_105 | 1/C1/2960:2961, 1/C1/2970:2972 | Single bulged A | homologous IL_8GLP_154 IL_14190.5 | |
| IL_9R9O_106 | 1/C1/3004:3007, 1/C1/3139:3144 | Double sheared | homologous IL_9PN5_110 IL_58355.5 | |
| IL_9R9O_107 | 1/C1/3012:3014, 1/C1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_9PN5_111 IL_71625.6 | |
| IL_9R9O_108 | 1/C1/3018:3025, 1/C1/3030:3036 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8GLP_159 IL_34443.2 | |
| IL_9R9O_109 | 1/C1/3047:3051, 1/C1/3091:3094 | No text annotation | homologous IL_9PN5_113 IL_06671.4 | |
| IL_9R9O_110 | 1/C1/3054:3059, 1/C1/3084:3088 | No text annotation | homologous IL_9PN5_114 IL_43276.1 | |
| IL_9R9O_111 | 1/C1/3063:3064, 1/C1/3077:3080 | No text annotation | homologous IL_9PN5_115 IL_44609.5 | |
| IL_9R9O_112 | 1/C1/3103:3107, 1/C1/3127:3131 | UAA/GAN | homologous IL_9H3G_133 IL_08938.4 | |
| IL_9R9O_113 | 1/C1/3164:3166, 1/C1/3284:3286 | Isolated non-canonical cWW pair | homologous IL_9PN5_117 IL_01003.7 | |
| IL_9R9O_114 | 1/C1/3168:3170, 1/C1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_9PN5_118 IL_71625.6 | |
| IL_9R9O_115 | 1/C1/3177:3179, 1/C1/3210:3211 | Single bulged A | homologous IL_9PN5_119 IL_14190.5 | |
| IL_9R9O_116 | 1/C1/3179:3188, 1/C1/3204:3210 | No text annotation | homologous IL_9PN5_120 IL_68936.2 | |
| IL_9R9O_117 | 1/C1/3193:3194, 1/C1/3197:3199 | Single bulged U | homologous IL_9PN5_121 IL_97561.8 | |
| IL_9R9O_118 | 1/C1/3225:3229, 1/C1/3258:3260 | No text annotation | homologous IL_9PN5_122 IL_62925.2 | |
| IL_9R9O_119 | 1/C1/3233:3235, 1/C1/3252:3254 | Isolated non-canonical cWW pair | homologous IL_9PN5_123 IL_01003.7 | |
| IL_9R9O_120 | 1/C1/3235:3238, 1/C1/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_9PN5_124 IL_71194.5 | |
| IL_9R9O_121 | 1/C1/3300:3303, 1/C1/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_9PN5_125 IL_71194.5 | |
| IL_9R9O_122 | 1/C1/3318:3320, 1/C1/3387:3388 | Single bulged U | homologous IL_9PN5_126 IL_97561.8 | |
| IL_9R9O_123 | 1/C1/3324:3325, 1/C1/3381:3383 | Single bulged U | homologous IL_9PN5_127 IL_97561.8 | |
| IL_9R9O_124 | 1/C1/3328:3330, 1/C1/3373:3378 | No text annotation | homologous IL_9PN5_128 IL_00086.4 | |
| IL_9R9O_125 | 1/C1/3332:3337, 1/C1/3367:3371 | No text annotation | homologous IL_9PN5_129 IL_48489.4 | |
| IL_9R9O_126 | 1/C1/3340:3342, 1/C1/3363:3364 | Single bulged U | homologous IL_9PN5_130 IL_97561.8 | |
| IL_9R9O_127 | 1/C1/3342:3345, 1/C1/3360:3363 | Double sheared | homologous IL_8GLP_179 IL_58355.5 | |
| IL_9R9O_128 | 1/C1/3349:3350, 1/C1/3353:3356 | No text annotation | homologous IL_9PN5_132 IL_09092.2 | |
| IL_9R9O_129 | 1/C2/24:26, 1/C2/600:601 | Single bulged C | geometric IL_5F5H_001 IL_05642.6 | |
| IL_9R9O_130 | 1/C2/35:37, 1/C2/471:473 | Isolated non-canonical cWW pair | geometric IL_9PN5_143 IL_01003.7 | |
| IL_9R9O_131 | 1/C2/37:41, 1/C2/466:471 | No text annotation | homologous IL_9PN5_144 IL_35092.2 | |
| IL_9R9O_132 | 1/C2/42:48, 1/C2/431:433 | No text annotation | geometric IL_8GLP_191 IL_88082.5 | |
| IL_9R9O_133 | 1/C2/50:52, 1/C2/428:429 | Minor groove platform | homologous IL_9PN5_146 IL_26092.1 | |
| IL_9R9O_134 | 1/C2/58:63, 1/C2/87:89 | No text annotation | homologous IL_9PN5_147 IL_61299.9 | |
| IL_9R9O_135 | 1/C2/64:69, 1/C2/82:86 | No text annotation | homologous IL_9PN5_148 IL_21667.4 | |
| IL_9R9O_136 | 1/C2/109:112, 1/C2/302:305 | Tandem non-canonical cWW pairs | homologous IL_9PN5_149 IL_71194.5 | |
| IL_9R9O_137 | 1/C2/113:116, 1/C2/300:301 | No text annotation | homologous IL_9PN5_150 IL_71421.6 | |
| IL_9R9O_138 | 1/C2/117:122, 1/C2/295:299 | No text annotation | homologous IL_9PN5_151 IL_31545.4 | |
| IL_9R9O_139 | 1/C2/143:149, 1/C2/165:172 | No text annotation | homologous IL_9H3G_165 IL_24485.3 | |
| IL_9R9O_140 | 1/C2/150:153, 1/C2/161:164 | No text annotation | homologous IL_9H3G_166 IL_37443.2 | |
| IL_9R9O_142 | 1/C2/204:206, 1/C2/259:263 | No text annotation | homologous IL_9PN5_154 IL_36931.5 | |
| IL_9R9O_143 | 1/C2/206:208, 1/C2/257:259 | Isolated non-canonical cWW pair | homologous IL_9PN5_155 IL_71625.6 | |
| IL_9R9O_144 | 1/C2/267:270, 1/C2/285:287 | No text annotation | geometric IL_9H3G_111 IL_84227.2 | |
| IL_9R9O_145 | 1/C2/270:273, 1/C2/283:285 | No text annotation | geometric IL_9AXU_077 IL_16315.2 | |
| IL_9R9O_146 | 1/C2/311:316, 1/C2/348:355 | Kink-turn with non-sequential stacking | homologous IL_9PN5_159 IL_46174.7 | |
| IL_9R9O_147 | 1/C2/318:323, 1/C2/345:346 | No text annotation | homologous IL_9H3G_174 IL_01372.4 | |
| IL_9R9O_148 | 1/C2/363:365, 1/C2/376:381 | No text annotation | homologous IL_9PN5_161 IL_93336.4 | |
| IL_9R9O_149 | 1/C2/389:391, 1/C2/406:408 | Isolated cWH basepair | homologous IL_9PN5_162 IL_10892.5 | |
| IL_9R9O_150 | 1/C2/411:413, 1/C2/420:422 | Isolated non-canonical cWW pair | homologous IL_9PN5_163 IL_19025.1 | |
| IL_9R9O_151 | 1/C2/439:441, 1/C2/463:464 | Single bulged U | homologous IL_9PN5_164 IL_97561.8 | |
| IL_9R9O_152 | 1/C2/443:447, 1/C2/460:461 | No text annotation | homologous IL_9PN5_165 IL_26900.4 | |
| IL_9R9O_153 | 1/C2/447:448, 1/C2/458:460 | Single bulged G | homologous IL_9PN5_166 IL_28408.5 | |
| IL_9R9O_154 | 1/C2/481:483, 1/C2/504:507 | Isolated non-canonical cWW pair | geometric IL_9H3G_227 IL_01003.7 | |
| IL_9R9O_155 | 1/C2/514:516, 1/C2/536:543 | No text annotation | ||
| IL_9R9O_156 | 1/C2/517:518, 1/C2/533:535 | Minor groove platform | homologous IL_9H3G_183 IL_26092.1 | |
| IL_9R9O_157 | 1/C2/518:520, 1/C2/532:533 | Minor groove platform | homologous IL_9PN5_170 IL_26092.1 | |
| IL_9R9O_158 | 1/C2/550:557, 1/C2/587:588 | No text annotation | homologous IL_9PN5_171 IL_11411.4 | |
| IL_9R9O_159 | 1/C2/557:559, 1/C2/586:587 | Single bulged U | homologous IL_9PN5_172 IL_97561.8 | |
| IL_9R9O_160 | 1/C2/562:568, 1/C2/575:583 | Kink-turn related | homologous IL_9PN5_173 IL_52042.4 | |
| IL_9R9O_161 | 1/C2/616:622, 1/C2/1104:1105 | No text annotation | homologous IL_9PN5_174 IL_20847.4 | |
| IL_9R9O_162 | 1/C2/624:626, 1/C2/973:975 | Isolated non-canonical cWW pair | homologous IL_9PN5_175 IL_01003.7 | |
| IL_9R9O_163 | 1/C2/627:631, 1/C2/968:972 | No text annotation | homologous IL_9PN5_176 IL_05821.4 | |
| IL_9R9O_164 | 1/C2/746:747, 1/C2/802:805 | No text annotation | homologous IL_9PN5_178 IL_73108.5 | |
| IL_9R9O_165 | 1/C2/748:750, 1/C2/799:801 | Isolated non-canonical cWW pair | homologous IL_9PN5_179 IL_71625.6 | |
| IL_9R9O_166 | 1/C2/751:759, 1/C2/791:798 | No text annotation | homologous IL_9H3G_194 IL_59049.5 | |
| IL_9R9O_167 | 1/C2/817:822, 1/C2/850:854 | No text annotation | ||
| IL_9R9O_169 | 1/C2/865:866, 1/C2/962:965 | Major groove platform; stack outside cWW | geometric IL_9PN5_182 IL_74641.5 | |
| IL_9R9O_170 | 1/C2/868:869, 1/C2/958:960 | Single bulged U | geometric IL_9AXU_050 IL_97561.8 | |
| IL_9R9O_171 | 1/C2/871:874, 1/C2/953:956 | Tandem non-canonical cWW pairs | homologous IL_9PN5_184 IL_15225.5 | |
| IL_9R9O_172 | 1/C2/874:878, 1/C2/950:953 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.5 | |
| IL_9R9O_173 | 1/C2/885:888, 1/C2/924:927 | Tandem non-canonical cWW pairs | homologous IL_9PN5_186 IL_15225.5 | |
| IL_9R9O_174 | 1/C2/893:899, 1/C2/910:919 | No text annotation | homologous IL_9PN5_187 NA | |
| IL_9R9O_175 | 1/C2/985:990, 1/C2/1014:1016 | No text annotation | homologous IL_9PN5_189 IL_31690.2 | |
| IL_9R9O_176 | 1/C2/990:994, 1/C2/1010:1014 | No text annotation | homologous IL_9PN5_190 IL_05821.4 | |
| IL_9R9O_177 | 1/C2/1034:1036, 1/C2/1095:1101 | No text annotation | homologous IL_9H3G_205 IL_82706.5 | |
| IL_9R9O_178 | 1/C2/1041:1044, 1/C2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_9PN5_192 IL_15225.5 | |
| IL_9R9O_179 | 1/C2/1051:1053, 1/C2/1066:1067 | Single bulged U | homologous IL_9PN5_193 IL_97561.8 | |
| IL_9R9O_180 | 1/C2/1111:1118, 1/C2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_9PN5_194 IL_84044.4 | |
| IL_9R9O_181 | 1/C2/1146:1147, 1/C2/1630:1632 | Single bulged A | homologous IL_9PN5_195 IL_14190.5 | |
| IL_9R9O_182 | 1/C2/1149:1151, 1/C2/1627:1628 | Single bulged G | homologous IL_9PN5_196 IL_28408.5 | |
| IL_9R9O_183 | 1/C2/1157:1160, 1/C2/1617:1621 | No text annotation | homologous IL_9H3G_212 IL_63596.15 | |
| IL_9R9O_184 | 1/C2/1173:1175, 1/C2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_9PN5_198 IL_01003.7 | |
| IL_9R9O_185 | 1/C2/1178:1179, 1/C2/1459:1461 | Minor groove platform | homologous IL_9H3G_214 IL_37129.1 | |
| IL_9R9O_186 | 1/C2/1213:1215, 1/C2/1448:1450 | Isolated non-canonical cWW pair | homologous IL_9H3G_215 IL_01003.7 | |
| IL_9R9O_189 | 1/C2/1268:1270, 1/C2/1440:1441 | Single bulged U | homologous IL_9PN5_203 IL_97561.8 | |
| IL_9R9O_190 | 1/C2/1272:1276, 1/C2/1436:1438 | No text annotation | geometric IL_9PN5_204 IL_82453.4 | |
| IL_9R9O_191 | 1/C2/1272:1278, 1/C2/1430:1438 | No text annotation | homologous IL_9PN5_206 NA | |
| IL_9R9O_192 | 1/C2/1276:1278, 1/C2/1430:1436 | No text annotation | homologous IL_9H3G_221 IL_09439.2 | |
| IL_9R9O_193 | 1/C2/1280:1281, 1/C2/1426:1428 | Single bulged A | homologous IL_9H3G_222 IL_14190.5 | |
| IL_9R9O_194 | 1/C2/1290:1292, 1/C2/1323:1325 | Isolated cWH basepair | homologous IL_9H3G_223 IL_10892.5 | |
| IL_9R9O_195 | 1/C2/1306:1308, 1/C2/1317:1318 | Minor groove platform | homologous IL_9H3G_224 IL_37129.1 | |
| IL_9R9O_196 | 1/C2/1339:1342, 1/C2/1383:1385 | No text annotation | homologous IL_9PN5_212 IL_01003.7 | |
| IL_9R9O_197 | 1/C2/1345:1348, 1/C2/1377:1380 | No text annotation | homologous IL_9PN5_213 IL_78800.5 | |
| IL_9R9O_198 | 1/C2/1352:1354, 1/C2/1369:1373 | Isolated non-canonical cWW pair | geometric IL_5B2P_002 IL_71625.6 | |
| IL_9R9O_199 | 1/C2/1389:1392, 1/C2/1406:1412 | No text annotation | geometric IL_9H3G_228 IL_32376.2 | |
| IL_9R9O_200 | 1/C2/1480:1487, 1/C2/1519:1527 | No text annotation | homologous IL_9PN5_216 IL_74283.2 | |
| IL_9R9O_201 | 1/C2/1488:1494, 1/C2/1513:1518 | No text annotation | homologous IL_9PN5_217 IL_12629.2 | |
| IL_9R9O_202 | 1/C2/1495:1498, 1/C2/1509:1512 | No text annotation | homologous IL_9PN5_218 IL_39691.1 | |
| IL_9R9O_203 | 1/C2/1540:1545, 1/C2/1566:1571 | No text annotation | homologous IL_9PN5_219 IL_28265.2 | |
| IL_9R9O_204 | 1/C2/1636:1638, 1/C2/1764:1767 | No text annotation | homologous IL_9PN5_220 IL_18228.4 | |
| IL_9R9O_205 | 1/C2/1638:1641, 1/C2/1760:1764 | No text annotation | homologous IL_9PN5_221 IL_25873.5 | |
| IL_9R9O_206 | 1/C2/1642:1644, 1/C2/1757:1759 | Isolated non-canonical cWW pair | homologous IL_9PN5_222 IL_01003.7 | |
| IL_9R9O_207 | 1/C2/1644:1647, 1/C2/1753:1757 | No text annotation | homologous IL_9PN5_223 IL_37443.2 | |
| IL_9R9O_208 | 1/C2/1650:1652, 1/C2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_9PN5_224 IL_01003.7 | |
| IL_9R9O_209 | 1/C2/1653:1656, 1/C2/1744:1747 | Double sheared | homologous IL_9PN5_225 IL_58355.5 | |
| IL_9R9O_210 | 1/C2/1656:1658, 1/C2/1743:1744 | Single bulged U | homologous IL_9PN5_226 IL_97561.8 | |
| IL_9R9O_211 | 1/C2/1665:1667, 1/C2/1734:1736 | No text annotation | homologous IL_9PN5_227 IL_55553.3 | |
| IL_9R9O_212 | 1/C2/1669:1672, 1/C2/1729:1732 | Double sheared | homologous IL_9H3G_241 IL_58355.5 | |
| IL_9R9O_213 | 1/C2/1672:1674, 1/C2/1727:1729 | Isolated non-canonical cWW pair | homologous IL_9PN5_229 IL_01003.7 | |
| IL_9R9O_214 | 1/C2/1675:1678, 1/C2/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_9PN5_230 IL_71194.5 | |
| IL_9R9O_215 | 1/C2/1678:1682, 1/C2/1719:1723 | No text annotation | homologous IL_9PN5_231 IL_15190.5 | |
| IL_9R9O_216 | 1/C3/64:66, 1/C3/93:96 | No text annotation | homologous IL_9PN5_140 IL_30722.2 | |
| IL_9R9O_217 | 1/C3/68:69, 1/C3/89:91 | Single bulged U | homologous IL_9AXU_132 IL_97561.8 | |
| IL_9R9O_218 | 1/C4/15:16, 1/C4/63:65 | Single bulged A | geometric IL_8P9A_364 NA | |
| IL_9R9O_219 | 1/C4/21:27, 1/C4/53:58 | No text annotation | geometric IL_8OI5_135 IL_41504.3 | |
| IL_9R9O_220 | 1/C4/28:29, 1/C4/49:52 | No text annotation | geometric IL_8OI5_136 IL_87975.2 | |
| IL_9R9O_221 | 1/C4/29:30, 1/C4/47:49 | Single stack bend | geometric IL_8OI5_137 IL_15011.6 | |
| IL_9R9O_222 | 1/C4/32:36, 1/C4/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.15 | |
| IL_9R9O_223 | 1/C4/72:80, 1/C4/100:106 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8OI5_139 IL_62167.6 | |
| IL_9R9O_224 | 1/C4/84:87, 1/C4/94:96 | Isolated non-canonical cWW pair | geometric IL_8OI5_140 IL_01003.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9R9O_001 | Stack and bulge | ||
| IL_9R9O_010 | No text annotation | ||
| IL_9R9O_051 | Kink-turn | ||
| IL_9R9O_059 | Minor groove platform | ||
| IL_9R9O_089 | Isolated non-canonical cWW pair | ||
| IL_9R9O_141 | No text annotation | ||
| IL_9R9O_168 | No text annotation | ||
| IL_9R9O_187 | No text annotation | ||
| IL_9R9O_188 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9R9O_001 | 1/C1/113:123, 1/C1/149:158, 1/C1/263:267 | No text annotation | homologous J3_9PN5_001 J3_69230.4 | |
| J3_9R9O_002 | 1/C1/113:124, 1/C1/144:158, 1/C1/263:267 | No text annotation | ||
| J3_9R9O_003 | 1/C1/185:189, 1/C1/205:214, 1/C1/226:231 | No text annotation | homologous J3_9PN5_003 J3_76204.1 | |
| J3_9R9O_004 | 1/C1/340:356, 1/C1/363:368, 1/C3/21:24 | No text annotation | homologous J3_9PN5_004 J3_07616.4 | |
| J3_9R9O_005 | 1/C1/369:376, 1/C1/403:404, 1/C3/19:20 | No text annotation | geometric J3_9PN5_005 J3_68715.4 | |
| J3_9R9O_006 | 1/C1/369:379, 1/C1/390:404, 1/C3/19:20 | No text annotation | homologous J3_9PN5_006 J3_17917.4 | |
| J3_9R9O_007 | 1/C1/502:503, 1/C1/588:597, 1/C1/606:611 | No text annotation | homologous J3_9PN5_007 J3_86133.3 | |
| J3_9R9O_008 | 1/C1/814:820, 1/C1/905:907, 1/C1/923:926 | No text annotation | homologous J3_9PN5_008 J3_46658.4 | |
| J3_9R9O_009 | 1/C1/828:831, 1/C1/863:867, 1/C1/892:897 | No text annotation | homologous J3_9H3G_013 J3_69816.4 | |
| J3_9R9O_010 | 1/C1/986:987, 1/C1/1062:1066, 1/C1/1092:1098 | No text annotation | homologous J3_9PN5_010 J3_22278.2 | |
| J3_9R9O_011 | 1/C1/1479:1485, 1/C1/1857:1859, 1/C1/1871:1874 | No text annotation | homologous J3_9PN5_012 J3_05025.4 | |
| J3_9R9O_012 | 1/C1/1488:1491, 1/C1/1837:1843, 1/C1/1852:1854 | No text annotation | homologous J3_9PN5_013 J3_76012.4 | |
| J3_9R9O_013 | 1/C1/1526:1531, 1/C1/1591:1595, 1/C1/1612:1613 | No text annotation | homologous J3_9PN5_014 J3_94309.4 | |
| J3_9R9O_014 | 1/C1/1537:1542, 1/C1/1551:1560, 1/C1/1579:1584 | No text annotation | ||
| J3_9R9O_015 | 1/C1/1631:1632, 1/C1/1641:1645, 1/C1/1810:1811 | No text annotation | homologous J3_9PN5_016 J3_05348.4 | |
| J3_9R9O_016 | 1/C1/1654:1658, 1/C1/1791:1792, 1/C1/1796:1801 | No text annotation | homologous J3_9PN5_017 J3_08594.4 | |
| J3_9R9O_017 | 1/C1/2432:2435, 1/C1/2512:2517, 1/C1/2590:2597 | No text annotation | homologous J3_9PN5_018 J3_63968.2 | |
| J3_9R9O_018 | 1/C1/2529:2532, 1/C1/2547:2563, 1/C1/2578:2581 | No text annotation | homologous J3_9PN5_019 J3_60469.1 | |
| J3_9R9O_019 | 1/C1/2651:2653, 1/C1/2754:2765, 1/C1/2793:2798 | No text annotation | homologous J3_9PN5_020 J3_04772.4 | |
| J3_9R9O_020 | 1/C1/2664:2666, 1/C1/2690:2692, 1/C1/2701:2706 | No text annotation | homologous J3_9PN5_021 J3_05327.4 | |
| J3_9R9O_021 | 1/C1/2886:2889, 1/C1/2914:2916, 1/C1/2930:2936 | No text annotation | homologous J3_9PN5_022 J3_44047.4 | |
| J3_9R9O_022 | 1/C1/3171:3176, 1/C1/3212:3220, 1/C1/3265:3279 | No text annotation | ||
| J3_9R9O_023 | 1/C1/3298:3300, 1/C1/3314:3318, 1/C1/3388:3390 | No text annotation | homologous J3_9PN5_024 NA | |
| J3_9R9O_024 | 1/C2/41:42, 1/C2/433:439, 1/C2/464:466 | No text annotation | geometric J3_9PN5_027 J3_58657.4 | |
| J3_9R9O_025 | 1/C2/41:48, 1/C2/431:439, 1/C2/464:466 | No text annotation | homologous J3_9PN5_028 J3_63856.4 | |
| J3_9R9O_026 | 1/C2/633:635, 1/C2/861:865, 1/C2/965:966 | No text annotation | geometric J3_9PN5_030 J3_01633.3 | |
| J3_9R9O_027 | 1/C2/633:635, 1/C2/861:866, 1/C2/962:966 | No text annotation | homologous J3_9PN5_031 J3_17385.8 | |
| J3_9R9O_028 | 1/C2/760:763, 1/C2/773:775, 1/C2/785:790 | No text annotation | homologous J3_9PN5_032 J3_97642.5 | |
| J3_9R9O_029 | 1/C2/881:884, 1/C2/928:936, 1/C2/943:947 | No text annotation | homologous J3_9PN5_033 NA | |
| J3_9R9O_030 | 1/C2/1037:1039, 1/C2/1079:1083, 1/C2/1090:1094 | No text annotation | geometric J3_8CRE_077 J3_41498.1 | |
| J3_9R9O_031 | 1/C2/1161:1164, 1/C2/1581:1587, 1/C2/1609:1616 | No text annotation | homologous J3_9PN5_035 J3_85722.4 | |
| J3_9R9O_032 | 1/C2/1168:1171, 1/C2/1468:1470, 1/C2/1574:1577 | No text annotation | homologous J3_9PN5_036 J3_44359.4 | |
| J3_9R9O_033 | 1/C2/1180:1187, 1/C2/1198:1209, 1/C2/1454:1458 | No text annotation | homologous J3_9PN5_037 J3_88451.4 | |
| J3_9R9O_034 | 1/C2/1215:1220, 1/C2/1263:1267, 1/C2/1442:1448 | No text annotation | homologous J3_9H3G_038 J3_87797.4 | |
| J3_9R9O_035 | 1/C2/1283:1288, 1/C2/1327:1332, 1/C2/1419:1424 | No text annotation | homologous J3_9H3G_039 NA | |
| J3_9R9O_036 | 1/C2/1293:1294, 1/C2/1303:1306, 1/C2/1318:1322 | No text annotation | homologous J3_9PN5_040 J3_76043.7 | |
| J3_9R9O_037 | 1/C2/1336:1338, 1/C2/1386:1389, 1/C2/1412:1415 | No text annotation | geometric J3_9PN5_041 J3_82365.8 | |
| J3_9R9O_038 | 1/C2/1336:1338, 1/C2/1386:1392, 1/C2/1406:1415 | No text annotation | homologous J3_9H3G_042 J3_40706.2 | |
| J3_9R9O_039 | 1/C2/1470:1475, 1/C2/1532:1540, 1/C2/1571:1574 | No text annotation | ||
| J3_9R9O_040 | 1/C3/44:45, 1/C3/58:64, 1/C3/96:100 | No text annotation | homologous J3_9PN5_026 J3_01004.4 | |
| J3_9R9O_041 | 1/C4/9:14, 1/C4/66:67, 1/C4/111:112 | No text annotation | geometric J3_8QYX_024 J3_26985.4 | |
| J4_9R9O_001 | 1/6/7:11, 1/6/24:27, 1/6/43:49, 1/6/65:66 | tRNA junction | homologous J4_6CFJ_015 J4_95067.3 | |
| J4_9R9O_002 | 1/C1/112:113, 1/C1/267:272, 1/C1/293:299, 1/C1/316:319 | No text annotation | homologous J4_9PN5_001 J4_94698.4 | |
| J4_9R9O_003 | 1/C1/185:189, 1/C1/205:208, 1/C1/212:214, 1/C1/226:231 | No text annotation | homologous J4_9PN5_002 J4_05458.1 | |
| J4_9R9O_004 | 1/C1/1451:1457, 1/C1/1475:1476, 1/C1/1877:1880, 1/C1/2352:2353 | No text annotation | homologous J4_9PN5_003 J4_19484.2 | |
| J4_9R9O_005 | 1/C1/1492:1496, 1/C1/1520:1525, 1/C1/1614:1615, 1/C1/1829:1836 | No text annotation | homologous J4_9PN5_004 J4_17758.2 | |
| J4_9R9O_006 | 1/C1/1674:1675, 1/C1/1693:1694, 1/C1/1752:1753, 1/C1/1772:1773 | No text annotation | homologous J4_9AXU_006 J4_75575.3 | |
| J4_9R9O_007 | 1/C1/2130:2134, 1/C1/2146:2150, 1/C1/2186:2190, 1/C1/2317:2322 | No text annotation | homologous J4_9PN5_006 J4_78485.4 | |
| J4_9R9O_008 | 1/C1/2192:2194, 1/C1/2248:2249, 1/C1/2267:2276, 1/C1/2310:2315 | No text annotation | homologous J4_8GLP_010 J4_21738.2 | |
| J4_9R9O_009 | 1/C1/2654:2658, 1/C1/2712:2716, 1/C1/2740:2742, 1/C1/2751:2753 | No text annotation | homologous J4_9PN5_008 J4_59590.4 | |
| J4_9R9O_010 | 1/C1/3010:3012, 1/C1/3042:3043, 1/C1/3098:3100, 1/C1/3134:3136 | No text annotation | homologous J4_9PN5_009 J4_37757.4 | |
| J4_9R9O_011 | 1/C2/99:107, 1/C2/307:309, 1/C2/357:361, 1/C2/383:384 | No text annotation | homologous J4_9H3G_013 J4_15241.5 | |
| J4_9R9O_012 | 1/C2/622:624, 1/C2/975:980, 1/C2/1021:1032, 1/C2/1103:1104 | No text annotation | homologous J4_9PN5_011 J4_14595.4 | |
| J5_9R9O_001 | 1/C1/20:22, 1/C3/35:42, 1/C3/102:107, 1/C3/115:116, 1/C3/137:139 | No text annotation | homologous J5_9PN5_001 J5_27223.4 | |
| J5_9R9O_002 | 1/C1/658:663, 1/C1/799:802, 1/C1/941:944, 1/C1/1375:1376, 1/C1/1431:1437 | No text annotation | homologous J5_9PN5_002 J5_08384.4 | |
| J5_9R9O_003 | 1/C1/675:678, 1/C1/702:706, 1/C1/713:721, 1/C1/749:751, 1/C1/782:787 | No text annotation | homologous J5_9PN5_003 J5_56629.2 | |
| J5_9R9O_004 | 1/C1/1906:1914, 1/C1/1938:1939, 1/C1/2109:2110, 1/C1/2114:2122, 1/C1/2331:2333 | No text annotation | homologous J5_9PN5_004 J5_99177.4 | |
| J5_9R9O_005 | 1/C1/2399:2406, 1/C1/2815:2823, 1/C1/2867:2876, 1/C1/2951:2957, 1/C1/2975:2980 | No text annotation | ||
| J5_9R9O_006 | 1/C1/2416:2419, 1/C1/2611:2614, 1/C1/2627:2628, 1/C1/2650:2651, 1/C1/2798:2804 | No text annotation | homologous J5_9PN5_006 J5_96125.4 | |
| J5_9R9O_007 | 1/C2/31:35, 1/C2/473:479, 1/C2/509:514, 1/C2/543:546, 1/C2/592:595 | No text annotation | homologous J5_9PN5_007 J5_04786.3 | |
| J5_9R9O_008 | 1/C2/54:57, 1/C2/90:97, 1/C2/386:388, 1/C2/409:411, 1/C2/422:426 | No text annotation | homologous J5_9PN5_009 J5_58574.4 | |
| J6_9R9O_001 | 1/C1/22:27, 1/C1/58:68, 1/C1/75:79, 1/C1/106:110, 1/C1/321:331, 1/C3/32:35 | No text annotation | ||
| J7_9R9O_001 | 1/C1/949:954, 1/C1/967:968, 1/C1/1114:1117, 1/C1/1141:1146, 1/C1/1157:1161, 1/C1/1338:1339, 1/C1/1365:1370 | No text annotation |
Problematic loops
No problematic loops
Coloring options: