HL_9R9O_012

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAAAUUCC

Length

10 nucleotides

Bulged bases

9R9O|1|C1|G|304, 9R9O|1|C1|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_012 not in the Motif Atlas

Homologous match to HL_9PN5_009

Geometric discrepancy: 0.1116

The information below is about HL_9PN5_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00911.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9R9O|1|C1|G|303
9R9O|1|C1|G|304
9R9O|1|C1|U|305
9R9O|1|C1|A|306
9R9O|1|C1|A|307
9R9O|1|C1|A|308
9R9O|1|C1|U|309
9R9O|1|C1|U|310
9R9O|1|C1|C|311
9R9O|1|C1|C|312

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LN

60S ribosomal protein L15-A

Chain La

60S ribosomal protein L28

Chain Li

60S ribosomal protein L36-A

Chain Lo

60S ribosomal protein L42-A