HL_9R9O_013
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGUGAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9R9O_013 not in the Motif Atlas
- Homologous match to HL_9AXU_010
- Geometric discrepancy: 0.0918
- The information below is about HL_9AXU_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 456
Unit IDs
9R9O|1|C1|A|357
9R9O|1|C1|G|358
9R9O|1|C1|U|359
9R9O|1|C1|G|360
9R9O|1|C1|A|361
9R9O|1|C1|U|362
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain B
- Phosphoglycerate kinase
- Chain LC
- 60S ribosomal protein L4-A
- Chain Lj
- 60S ribosomal protein L37-A
- Chain Ll
- 60S ribosomal protein L39
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