HL_9R9O_028

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9O|1|C1|G|1148
9R9O|1|C1|G|1149
9R9O|1|C1|A|1150
9R9O|1|C1|U|1151
9R9O|1|C1|G|1152
9R9O|1|C1|A|1153
9R9O|1|C1|A|1154
9R9O|1|C1|C|1155

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain LF

60S ribosomal protein L7-A

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L33-A