HL_9R9O_029

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

9R9O|1|C1|U|1348, 9R9O|1|C1|U|1351, 9R9O|1|C1|A|1352, 9R9O|1|C1|U|1353, 9R9O|1|C1|G|1354, 9R9O|1|C1|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9O|1|C1|U|1347
9R9O|1|C1|U|1348
9R9O|1|C1|G|1349
9R9O|1|C1|A|1350
9R9O|1|C1|U|1351
9R9O|1|C1|A|1352
9R9O|1|C1|U|1353
9R9O|1|C1|G|1354
9R9O|1|C1|A|1355
9R9O|1|C1|U|1356
9R9O|1|C1|G|1357

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4-A

Chain LE

60S ribosomal protein L6-B

Chain LQ

60S ribosomal protein L18-A

Chain Le

60S ribosomal protein L32