HL_9R9O_032

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

9R9O|1|C1|G|1507, 9R9O|1|C1|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_032 not in the Motif Atlas

Homologous match to HL_9AXU_029

Geometric discrepancy: 0.1444

The information below is about HL_9AXU_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49081.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9R9O|1|C1|A|1506
9R9O|1|C1|G|1507
9R9O|1|C1|C|1508
9R9O|1|C1|A|1509
9R9O|1|C1|G|1510
9R9O|1|C1|U|1511
9R9O|1|C1|U|1512

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17-A

Chain LR

60S ribosomal protein L19-A

Chain Ll

60S ribosomal protein L39