HL_9R9O_034

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

9R9O|1|C1|U|1606, 9R9O|1|C1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_034 not in the Motif Atlas

Homologous match to HL_9PN5_034

Geometric discrepancy: 0.0687

The information below is about HL_9PN5_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

9R9O|1|C1|G|1599
9R9O|1|C1|U|1600
9R9O|1|C1|U|1601
9R9O|1|C1|A|1602
9R9O|1|C1|A|1603
9R9O|1|C1|G|1604
9R9O|1|C1|A|1605
9R9O|1|C1|U|1606
9R9O|1|C1|U|1607
9R9O|1|C1|C|1608

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain LX

60S ribosomal protein L25

Chain Lg

60S ribosomal protein L34-A