HL_9R9O_041

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9R9O|1|C1|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_041 not in the Motif Atlas

Homologous match to HL_9AXU_040

Geometric discrepancy: 0.0746

The information below is about HL_9AXU_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9R9O|1|C1|C|1923
9R9O|1|C1|U|1924
9R9O|1|C1|U|1925
9R9O|1|C1|C|1926
9R9O|1|C1|G|1927
9R9O|1|C1|G|1928

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

Large ribosomal subunit protein eL41B

Chain Lp

60S ribosomal protein L43-A