HL_9R9O_045

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_045 not in the Motif Atlas

Homologous match to HL_9PN5_046

Geometric discrepancy: 0.0857

The information below is about HL_9PN5_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9R9O|1|C1|A|2220
9R9O|1|C1|G|2221
9R9O|1|C1|A|2222
9R9O|1|C1|A|2223
9R9O|1|C1|A|2224
9R9O|1|C1|U|2225

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain Li

60S ribosomal protein L36-A

Chain Lo

60S ribosomal protein L42-A