HL_9R9O_065

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

9R9O|1|C1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_065 not in the Motif Atlas

Homologous match to HL_9PN5_068

Geometric discrepancy: 0.0985

The information below is about HL_9PN5_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.4

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9R9O|1|C1|G|3303
9R9O|1|C1|U|3304
9R9O|1|C1|A|3305
9R9O|1|C1|U|3306
9R9O|1|C1|A|3307
9R9O|1|C1|C|3308
9R9O|1|C1|G|3309
9R9O|1|C1|A|3310
9R9O|1|C1|C|3311

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17-A

Chain Ld

60S ribosomal protein L31-A