HL_9R9O_081

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_081 not in the Motif Atlas

Homologous match to HL_9H3G_093

Geometric discrepancy: 0.1378

The information below is about HL_9H3G_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9R9O|1|C2|A|900
9R9O|1|C2|G|901
9R9O|1|C2|G|902
9R9O|1|C2|U|903
9R9O|1|C2|G|904
9R9O|1|C2|A|905
9R9O|1|C2|A|906
9R9O|1|C2|A|907
9R9O|1|C2|U|908
9R9O|1|C2|U|909

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain 5

mRNA_Flag-Pgk-1-70

Chain SB

40S ribosomal protein S1-A

Chain SF

40S ribosomal protein S5

Chain SO

40S ribosomal protein S14-A