HL_9R9O_085

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_085 not in the Motif Atlas

Homologous match to HL_9PN5_100

Geometric discrepancy: 0.0895

The information below is about HL_9PN5_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9R9O|1|C2|C|1121
9R9O|1|C2|G|1122
9R9O|1|C2|C|1123
9R9O|1|C2|A|1124
9R9O|1|C2|A|1125
9R9O|1|C2|G|1126

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

Large ribosomal subunit protein eL41B

Chain Lp

60S ribosomal protein L43-A