HL_9R9O_087

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

9R9O|1|C2|G|1243, 9R9O|1|C2|G|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_087 not in the Motif Atlas

Homologous match to HL_9PN5_102

Geometric discrepancy: 0.2303

The information below is about HL_9PN5_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.6

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9R9O|1|C2|A|1238
9R9O|1|C2|U|1239
9R9O|1|C2|U|1240
9R9O|1|C2|G|1241
9R9O|1|C2|A|1242
9R9O|1|C2|G|1243
9R9O|1|C2|A|1244
9R9O|1|C2|G|1245
9R9O|1|C2|C|1246
9R9O|1|C2|U|1247

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SP

40S ribosomal protein S15