HL_9R9O_089

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

9R9O|1|C2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_089 not in the Motif Atlas

Homologous match to HL_9H3G_102

Geometric discrepancy: 0.1084

The information below is about HL_9H3G_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9R9O|1|C2|C|1309
9R9O|1|C2|U|1310
9R9O|1|C2|U|1311
9R9O|1|C2|A|1312
9R9O|1|C2|A|1313
9R9O|1|C2|U|1314
9R9O|1|C2|U|1315
9R9O|1|C2|G|1316

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SR

40S ribosomal protein S17-B