HL_9R9O_094

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

9R9O|1|C2|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_094 not in the Motif Atlas

Homologous match to HL_9H3G_107

Geometric discrepancy: 0.1812

The information below is about HL_9H3G_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25307.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9R9O|1|C2|G|1594
9R9O|1|C2|U|1595
9R9O|1|C2|C|1596
9R9O|1|C2|A|1597
9R9O|1|C2|U|1598
9R9O|1|C2|C|1599
9R9O|1|C2|A|1600
9R9O|1|C2|G|1601
9R9O|1|C2|C|1602

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16-A

Chain ST

40S ribosomal protein S19-A

Chain SU

Small ribosomal subunit protein uS10

Chain Sd

Small ribosomal subunit protein uS14A