HL_9R9P_031
3D structure
- PDB id
- 9R9P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9R9P_031 not in the Motif Atlas
- Homologous match to HL_9AXU_028
- Geometric discrepancy: 0.087
- The information below is about HL_9AXU_028
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 142
Unit IDs
9R9P|1|C1|A|1462
9R9P|1|C1|U|1463
9R9P|1|C1|G|1464
9R9P|1|C1|A|1465
9R9P|1|C1|G|1466
9R9P|1|C1|A|1467
9R9P|1|C1|A|1468
9R9P|1|C1|C|1469
9R9P|1|C1|U|1470
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain LP
- 60S ribosomal protein L17-A
- Chain LR
- 60S ribosomal protein L19-A
- Chain Ld
- 60S ribosomal protein L31-A
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