HL_9R9P_070

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

9R9P|1|C2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9P_070 not in the Motif Atlas

Homologous match to HL_9PN5_082

Geometric discrepancy: 0.1194

The information below is about HL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9R9P|1|C2|G|243
9R9P|1|C2|A|244
9R9P|1|C2|U|245
9R9P|1|C2|G|246
9R9P|1|C2|A|247
9R9P|1|C2|U|248
9R9P|1|C2|U|249
9R9P|1|C2|C|250

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SL

40S ribosomal protein S11-A