HL_9R9P_074

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9R9P|1|C2|C|402, 9R9P|1|C2|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C2|C|393
9R9P|1|C2|C|394
9R9P|1|C2|U|395
9R9P|1|C2|G|396
9R9P|1|C2|A|397
9R9P|1|C2|G|398
9R9P|1|C2|A|399
9R9P|1|C2|A|400
9R9P|1|C2|A|401
9R9P|1|C2|C|402
9R9P|1|C2|G|403
9R9P|1|C2|G|404

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A

Chain SY

40S ribosomal protein S24-A