HL_9R9P_080

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

9R9P|1|C2|A|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9P_080 not in the Motif Atlas

Homologous match to HL_9PN5_093

Geometric discrepancy: 0.4893

The information below is about HL_9PN5_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.5

Basepair signature

cWW-F-F

Number of instances in this motif group

21

Unit IDs

9R9P|1|C2|C|777
9R9P|1|C2|G|778
9R9P|1|C2|U|779
9R9P|1|C2|A|780
9R9P|1|C2|U|781
9R9P|1|C2|U|782
9R9P|1|C2|G|783

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SY

40S ribosomal protein S24-A