HL_9R9P_081

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C2|A|900
9R9P|1|C2|G|901
9R9P|1|C2|G|902
9R9P|1|C2|U|903
9R9P|1|C2|G|904
9R9P|1|C2|A|905
9R9P|1|C2|A|906
9R9P|1|C2|A|907
9R9P|1|C2|U|908
9R9P|1|C2|U|909

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain 5

mRNA_Flag-Pgk-1-70

Chain SB

40S ribosomal protein S1-A

Chain SF

40S ribosomal protein S5

Chain SO

40S ribosomal protein S14-A