HL_9R9P_093

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

9R9P|1|C2|U|1557, 9R9P|1|C2|U|1558, 9R9P|1|C2|A|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C2|A|1550
9R9P|1|C2|U|1551
9R9P|1|C2|U|1552
9R9P|1|C2|G|1553
9R9P|1|C2|U|1554
9R9P|1|C2|A|1555
9R9P|1|C2|A|1556
9R9P|1|C2|U|1557
9R9P|1|C2|U|1558
9R9P|1|C2|A|1559
9R9P|1|C2|U|1560
9R9P|1|C2|U|1561

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18-A

Chain ST

40S ribosomal protein S19-A

Chain Sd

Small ribosomal subunit protein uS14A