HL_9RBF_033

3D structure

PDB id

9RBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CAGCUUGGUAG

Length

11 nucleotides

Bulged bases

9RBF|1|Z|C|16, 9RBF|1|Z|U|17, 9RBF|1|Z|U|18, 9RBF|1|Z|G|19, 9RBF|1|Z|G|20, 9RBF|1|Z|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RBF_033 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.2247

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9RBF|1|Z|C|13
9RBF|1|Z|A|14
9RBF|1|Z|G|15
9RBF|1|Z|C|16
9RBF|1|Z|U|17
9RBF|1|Z|U|18
9RBF|1|Z|G|19
9RBF|1|Z|G|20
9RBF|1|Z|U|21
9RBF|1|Z|A|22
9RBF|1|Z|G|23

Current chains

Chain Z

P-site tRNA-Pro

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain f

Large ribosomal subunit protein uL5