HL_9RFW_022

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9RFW|1|a|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RFW_022 not in the Motif Atlas

Geometric match to HL_8B0X_049

Geometric discrepancy: 0.1269

The information below is about HL_8B0X_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9RFW|1|a|C|611
9RFW|1|a|G|612
9RFW|1|a|A|613
9RFW|1|a|A|614
9RFW|1|a|U|615
9RFW|1|a|A|616
9RFW|1|a|G|617

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4