HL_9RFW_050

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9RFW|1|a|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RFW_050 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.1339

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9RFW|1|a|G|1949
9RFW|1|a|G|1950
9RFW|1|a|U|1951
9RFW|1|a|A|1952
9RFW|1|a|A|1953
9RFW|1|a|G|1954
9RFW|1|a|U|1955
9RFW|1|a|U|1956
9RFW|1|a|C|1957

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

Large ribosomal subunit protein uL14